If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 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'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ), 'gf_id' => 'HOM05D000807', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000807' ), 'data_identifier' => 'HOM05D000807', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000807', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '731', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p21200' => 'bna', 'A03p35620' => 'bna', 'A03p35630' => 'bna', 'A05p19670' => 'bna', 'A05p40260' => 'bna', 'A08p02970' => 'bna', 'Aa31LG10G3510' => 'aar', 'Aa31LG5G18590' => 'aar', 'Aa31LG5G24040' => 'aar', 'Aa31LG5G24070' => 'aar', 'Aa31LG6G16800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1532' => 'aag', 'Actinidia16333' => 'ach', 'Actinidia17243' => 'ach', 'Actinidia19392' => 'ach', 'Actinidia20764' => 'ach', 'Actinidia20765' => 'ach', 'Actinidia28740' => 'ach', 'Actinidia31063' => 'ach', 'Actinidia32017' => 'ach', 'Actinidia32540' => 'ach', 'Actinidia38561' => 'ach', 'Ah.01g023660' => 'amhyb', 'Ah.06g194240' => 'amhyb', 'Ah.10g038840' => 'amhyb', 'Ah.12g059030' => 'amhyb', 'AL1G59150' => 'aly', 'AL1G59160' => 'aly', 'AL3G19430' => 'aly', 'AL4G35520' => 'aly', 'AL4G35560' => 'aly', 'AL7G10250' => 'aly', 'AL96U10060' => 'aly', 'Aqoxy1G00308' => 'aox', 'Aqoxy1G00309' => 'aox', 'Aqoxy1G01293' => 'aox', 'Aqoxy6G01731' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1ERV7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Y45Q7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2T6Q54' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37C7XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M7FM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45U3L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5DIS84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK8UPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV54DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C41B5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DH6IGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK4T5X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H64M7Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF4V0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J04VDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JR24WJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01QY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N5W5LK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3D778' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PWI1R1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9LP7J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TND3PH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8BY14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XMU0ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YHN8YH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z17CL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z9FA5A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZAC0X2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3P1W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRA95S' => 'arhy', 'AT1G51340' => 'ath', 'AT2G38330' => 'ath', 'AT3G08040' => 'ath', 'AT4G38380' => 'ath', 'ATR0594G056' => 'atr', 'ATR0605G372' => 'atr', 'ATR0661G425' => 'atr', 'Atru.chr1.1047' => 'acertr', 'Atru.chr11.2661' => 'acertr', 'Atru.chr3.2724' => 'acertr', 'Atru.chr3.951' => 'acertr', 'Atru.chr5.3494' => 'acertr', 'Atru.chr8.2329' => 'acertr', 'AUR62009384' => 'cqu', 'AUR62012938' => 'cqu', 'AUR62023065' => 'cqu', 'AUR62027138' => 'cqu', 'AUR62030530' => 'cqu', 'AUR62030765' => 'cqu', 'BcaB01g03697' => 'bca', 'BcaB01g03701' => 'bca', 'BcaB02g11233' => 'bca', 'BcaB03g11555' => 'bca', 'BcaB03g11565' => 'bca', 'BcaB04g17223' => 'bca', 'BcaB04g21257' => 'bca', 'BcaC01g00222' => 'bca', 'BcaC01g00230' => 'bca', 'BcaC01g01259' => 'bca', 'BcaC01g04267' => 'bca', 'BcaC01g04268' => 'bca', 'BcaC01g05547' => 'bca', 'BcaC05g27346' => 'bca', 'BcaC05g29588' => 'bca', 'BcaC05g29613' => 'bca', 'BcaC09g47974' => 'bca', 'BolC1t05506H' => 'bol', 'BolC3t14900H' => 'bol', 'BolC3t16594H' => 'bol', 'BolC3t16596H' => 'bol', 'BolC3t19961H' => 'bol', 'BolC3t21310H' => 'bol', 'BolC5t32003H' => 'bol', 'BolC5t34586H' => 'bol', 'BolC5t34587H' => 'bol', 'BraA01t04345Z' => 'bra', 'BraA01t04346Z' => 'bra', 'BraA03t11356Z' => 'bra', 'BraA03t11357Z' => 'bra', 'BraA03t12737Z' => 'bra', 'BraA03t12738Z' => 'bra', 'BraA05t20872Z' => 'bra', 'BraA08t32328Z' => 'bra', 'BraA08t34377Z' => 'bra', 'C03p25090' => 'bna', 'C03p43250' => 'bna', 'C03p43270' => 'bna', 'C03p89910' => 'bna', 'C05p32700' => 'bna', 'C05p59100' => 'bna', 'C05p59340' => 'bna', 'CAN.G445.9' => 'can', 'CANSAT11G0327' => 'cansat', 'CANSAT25G1601' => 'cansat', 'CANSAT35G1134' => 'cansat', 'CANSAT80G0824' => 'cansat', 'CANSAT80G1978' => 'cansat', 'CARHR041410' => 'chi', 'CARHR082780' => 'chi', 'CARHR132950' => 'chi', 'CARHR294120' => 'chi', 'Carub.0001s4020' => 'cru', 'Carub.0001s4021' => 'cru', 'Carub.0003s0762' => 'cru', 'Carub.0004s2030' => 'cru', 'Carub.0004s2031' => 'cru', 'Carub.0007s0027' => 'cru', 'Ca_01297_v3' => 'car', 'Ca_06499_v3' => 'car', 'Ca_14408_v3' => 'car', 'Ca_23859_v3' => 'car', 'Ca_26611_v3' => 'car', 'Cc02_g27950' => 'ccan', 'Cc06_g00790' => 'ccan', 'Cc06_g00800' => 'ccan', 'Cc06_g16970' => 'ccan', 'Cc07_g11590' => 'ccan', 'Cc07_g11600' => 'ccan', 'Cc09_g10630' => 'ccan', 'Cc09_g10640' => 'ccan', 'Cc10_g13490' => 'ccan', 'CDE04G1560' => 'cde', 'CDE04G2210' => 'cde', 'CDE05G1641' => 'cde', 'CDE06G1889' => 'cde', 'Cfa009769' => 'cfa', 'Cfa010763' => 'cfa', 'Cfa016849' => 'cfa', 'Cfa017118' => 'cfa', 'Ciclev10004816m.g' => 'ccl', 'Ciclev10011401m.g' => 'ccl', 'Ciclev10014936m.g' => 'ccl', 'Ciclev10027280m.g' => 'ccl', 'Ciclev10027539m.g' => 'ccl', 'Ciclev10028059m.g' => 'ccl', 'Ciclev10033633m.g' => 'ccl', 'CiPaw.01G174100' => 'cil', 'CiPaw.05G050300' => 'cil', 'CiPaw.06G117800' => 'cil', 'CiPaw.09G035900' => 'cil', 'CiPaw.09G214800' => 'cil', 'CiPaw.13G004900' => 'cil', 'CiPaw.13G161000' => 'cil', 'ClCG02G003550' => 'cla', 'ClCG02G023240' => 'cla', 'ClCG04G006710' => 'cla', 'ClCG09G004170' => 'cla', 'ClCG10G012360' => 'cla', 'COL.COLO4_04853' => 'col', 'COL.COLO4_04854' => 'col', 'COL.COLO4_07591' => 'col', 'COL.COLO4_07592' => 'col', 'COL.COLO4_14456' => 'col', 'COL.COLO4_17944' => 'col', 'COL.COLO4_28166' => 'col', 'Cpa.g.sc20.189' => 'cpa', 'Cpa.g.sc20.190' => 'cpa', 'Cpa.g.sc275.2' => 'cpa', 'Cpa.g.sc5.231' => 'cpa', 'Cpa.g.sc84.57' => 'cpa', 'Cre04.g213000' => 'cre', 'Cre04.g213150' => 'cre', 'Cre08.g369600' => 'cre', 'Cre17.g739650' => 'cre', 'CsaV3_3G032150' => 'csa', 'CsaV3_4G024250' => 'csa', 'CsaV3_4G026780' => 'csa', 'CsaV3_4G026920' => 'csa', 'CsaV3_7G001750' => 'csa', 'CsaV3_7G031060' => 'csa', 'CSS0001234' => 'camsi', 'CSS0012565' => 'camsi', 'CSS0021021' => 'camsi', 'CSS0024309' => 'camsi', 'CSS0026729' => 'camsi', 'CSS0030304' => 'camsi', 'CSS0031924' => 'camsi', 'CSS0032114' => 'camsi', 'CSS0035047' => 'camsi', 'CSS0037231' => 'camsi', 'CSS0041446' => 'camsi', 'CSS0050450' => 'camsi', 'DCAR_002071' => 'dca', 'DCAR_003211' => 'dca', 'DCAR_006291' => 'dca', 'DCAR_011584' => 'dca', 'DCAR_022401' => 'dca', 'DCAR_022402' => 'dca', 'DCAR_023999' => 'dca', 'DCAR_026590' => 'dca', 'Dinv05226' => 'din', 'Dinv07631' => 'din', 'Dinv08531' => 'din', 'Dinv09356' => 'din', 'Dinv11428' => 'din', 'Dinv18072' => 'din', 'Dinv18073' => 'din', 'Dinv35399' => 'din', 'Dinv36262' => 'din', 'Duzib052G1112' => 'dzi', 'Duzib093G0206' => 'dzi', 'Duzib093G2239' => 'dzi', 'Duzib133G1162' => 'dzi', 'Duzib138G0543' => 'dzi', 'Duzib150G0518' => 'dzi', 'Duzib170G0690' => 'dzi', 'Duzib268G0740' => 'dzi', 'ECA233G3551' => 'eca', 'ECA236G0667' => 'eca', 'ECA240G3543' => 'eca', 'ECA246G4880' => 'eca', 'ECA247G2109' => 'eca', 'ECA248G1372' => 'eca', 'ECA248G3159' => 'eca', 'EL10Ac2g03048' => 'bvu', 'EL10Ac2g04329' => 'bvu', 'EL10Ac4g10255' => 'bvu', 'EL10Ac4g10272' => 'bvu', 'EL10Ac5g12490' => 'bvu', 'EL10Ac9g21268' => 'bvu', 'Eucgr.A00615' => 'egr', 'Eucgr.A02386' => 'egr', 'Eucgr.G03382' => 'egr', 'Eucgr.G03383' => 'egr', 'Eucgr.I01509' => 'egr', 'Eucgr.J00768' => 'egr', 'Eucgr.J02520' => 'egr', 'Eucgr.L00936' => 'egr', 'FAN01G0332' => 'fan', 'FAN01G2482' => 'fan', 'FAN02G1089' => 'fan', 'FAN02G2207' => 'fan', 'FAN03G1921' => 'fan', 'FAN05G0982' => 'fan', 'FAN05G1978' => 'fan', 'FAN05G5347' => 'fan', 'FAN06G2756' => 'fan', 'FAN09G3952' => 'fan', 'FAN09G4192' => 'fan', 'FAN10G1608' => 'fan', 'FAN14G2036' => 'fan', 'FAN14G4951' => 'fan', 'FAN15G2854' => 'fan', 'FAN16G3179' => 'fan', 'FAN16G3245' => 'fan', 'FAN21G3666' => 'fan', 'FAN24G0071' => 'fan', 'FAN24G2736' => 'fan', 'FAN27G0176' => 'fan', 'FvH4_2g16390' => 'fve', 'FvH4_3g28870' => 'fve', 'FvH4_6g10700' => 'fve', 'FvH4_6g23370' => 'fve', 'FvH4_7g01040' => 'fve', 'Glyma.02G181800' => 'gma', 'Glyma.02G310800' => 'gma', 'Glyma.07G156100' => 'gma', 'Glyma.09G102800' => 'gma', 'Glyma.10G092250' => 'gma', 'Glyma.10G099900' => 'gma', 'Glyma.11G133900' => 'gma', 'Glyma.12G237367' => 'gma', 'Glyma.12G237433' => 'gma', 'Glyma.13G203000' => 'gma', 'Glyma.13G339800' => 'gma', 'Glyma.14G002000' => 'gma', 'Glyma.15G034600' => 'gma', 'Glyma.15G274600' => 'gma', 'Glyma.18G206500' => 'gma', 'Gohir.A01G196700' => 'ghi', 'Gohir.A01G229700' => 'ghi', 'Gohir.A04G125300' => 'ghi', 'Gohir.A08G028100' => 'ghi', 'Gohir.A08G144400' => 'ghi', 'Gohir.A09G114500' => 'ghi', 'Gohir.D01G186900' => 'ghi', 'Gohir.D01G219600' => 'ghi', 'Gohir.D04G170100' => 'ghi', 'Gohir.D05G320760' => 'ghi', 'Gohir.D08G038900' => 'ghi', 'Gohir.D08G165400' => 'ghi', 'Gohir.D09G111200' => 'ghi', 'Gohir.D10G182480' => 'ghi', 'Gorai.002G230300' => 'gra', 'Gorai.002G266300' => 'gra', 'Gorai.004G037400' => 'gra', 'Gorai.004G172500' => 'gra', 'Gorai.006G063900' => 'gra', 'Gorai.006G128800' => 'gra', 'Gorai.009G344000' => 'gra', 'Gorai.012G158400' => 'gra', 'GSVIVG01010278001' => 'vvi', 'GSVIVG01023938001' => 'vvi', 'GSVIVG01025266001' => 'vvi', 'GSVIVG01030279001' => 'vvi', 'GSVIVG01032091001' => 'vvi', 'GSVIVG01032092001' => 'vvi', 'GSVIVG01033317001' => 'vvi', 'HanXRQChr01g0015611' => 'han', 'HanXRQChr01g0015741' => 'han', 'HanXRQChr01g0015751' => 'han', 'HanXRQChr01g0015771' => 'han', 'HanXRQChr01g0015791' => 'han', 'HanXRQChr01g0018161' => 'han', 'HanXRQChr05g0160281' => 'han', 'HanXRQChr13g0405841' => 'han', 'HanXRQChr14g0459011' => 'han', 'HanXRQChr16g0510301' => 'han', 'HanXRQChr16g0526901' => 'han', 'Haze_01767' => 'cav', 'Haze_02047' => 'cav', 'Haze_03207' => 'cav', 'Haze_03208' => 'cav', 'Haze_19900' => 'cav', 'Haze_21084' => 'cav', 'Haze_23135' => 'cav', 'Hma1.2p1_0465F.1_g158470' => 'hma', 'Hma1.2p1_0986F.1_g244390' => 'hma', 'Hma1.2p1_1639F.1_g295000' => 'hma', 'HPP92_006097' => 'vpl', 'HPP92_007564' => 'vpl', 'HPP92_007905' => 'vpl', 'HPP92_020383' => 'vpl', 'HPP92_021225' => 'vpl', 'HPP92_024881' => 'vpl', 'HPP92_025497' => 'vpl', 'HPP92_025541' => 'vpl', 'Hund06170' => 'sun', 'Hund07509' => 'sun', 'Hund14180' => 'sun', 'Hund14928' => 'sun', 'Hund14929' => 'sun', 'Hund24729' => 'sun', 'Lalb_Chr02g0156391' => 'lal', 'Lalb_Chr03g0034071' => 'lal', 'Lalb_Chr10g0095301' => 'lal', 'Lalb_Chr14g0372101' => 'lal', 'Lalb_Chr19g0124211' => 'lal', 'Lalb_Chr20g0108021' => 'lal', 'Lalb_Chr24g0397101' => 'lal', 'Lalb_Chr25g0283071' => 'lal', 'Lalb_Chr25g0283081' => 'lal', 'Lalb_Chr25g0283091' => 'lal', 'Lj1C331T2' => 'lonja', 'Lj1g0008555' => 'lja', 'Lj1g0023054' => 'lja', 'Lj2A491G63' => 'lonja', 'Lj2A67G37' => 'lonja', 'Lj2A67T37' => 'lonja', 'Lj2C380G9' => 'lonja', 'Lj2C491G5' => 'lonja', 'Lj2g0014491' => 'lja', 'Lj3g0004103' => 'lja', 'Lj3g0019531' => 'lja', 'Lj3g0025542' => 'lja', 'Lj5A173G70' => 'lonja', 'Lj5g0004306' => 'lja', 'Lj6g0002396' => 'lja', 'Lj7C570T10' => 'lonja', 'Lj9C632G1' => 'lonja', 'LjContig00081g0002219' => 'lja', 'Lsat_1_v5_gn_0_22001' => 'lsa', 'Lsat_1_v5_gn_1_106760' => 'lsa', 'Lsat_1_v5_gn_1_106860' => 'lsa', 'Lsat_1_v5_gn_1_66080' => 'lsa', 'Lsat_1_v5_gn_2_76440' => 'lsa', 'Lsat_1_v5_gn_3_11661' => 'lsa', 'Lsat_1_v5_gn_3_69280' => 'lsa', 'Lsat_1_v5_gn_3_70301' => 'lsa', 'Lsat_1_v5_gn_4_123221' => 'lsa', 'Lsat_1_v5_gn_4_148580' => 'lsa', 'Lsat_1_v5_gn_7_67660' => 'lsa', 'Lsat_1_v5_gn_8_103420' => 'lsa', 'Lsat_1_v5_gn_8_120320' => 'lsa', 'Lsat_1_v5_gn_8_29860' => 'lsa', 'Lsat_1_v5_gn_9_27320' => 'lsa', 'Lsat_1_v5_gn_9_9580' => 'lsa', 'Manes.04G064900' => 'mes', 'Manes.06G164500' => 'mes', 'Manes.07G006000' => 'mes', 'Manes.08G096600' => 'mes', 'Manes.09G025022' => 'mes', 'Manes.09G025083' => 'mes', 'Manes.09G025144' => 'mes', 'Manes.09G025205' => 'mes', 'Manes.09G025266' => 'mes', 'Manes.09G025275' => 'mes', 'Manes.09G025327' => 'mes', 'Manes.09G025450' => 'mes', 'Manes.09G025511' => 'mes', 'Manes.09G025572' => 'mes', 'Manes.09G025633' => 'mes', 'Manes.09G025694' => 'mes', 'Manes.09G025816' => 'mes', 'Manes.09G025877' => 'mes', 'Manes.09G026900' => 'mes', 'Manes.10G143000' => 'mes', 'Manes.14G002600' => 'mes', 'Mapoly0056s0043' => 'mpo', 'MBI01_g18882_MAGBIO' => 'mbi', 'MBI02_g37284_MAGBIO' => 'mbi', 'MBI04_g17072_MAGBIO' => 'mbi', 'MBI04_g44512_MAGBIO' => 'mbi', 'MBI08_g15761_MAGBIO' => 'mbi', 'MBI08_g19963_MAGBIO' => 'mbi', 'MBI15_g16008_MAGBIO' => 'mbi', 'MBI15_g47211_MAGBIO' => 'mbi', 'MCO03G188' => 'mco', 'MCO10G292' => 'mco', 'MCO14G010' => 'mco', 'MCO15G597' => 'mco', 'MD00G1083400' => 'mdo', 'MD00G1083700' => 'mdo', 'MD00G1176800' => 'mdo', 'MD00G1176900' => 'mdo', 'MD02G1311900' => 'mdo', 'MD03G1175500' => 'mdo', 'MD04G1165300' => 'mdo', 'MD07G1010700' => 'mdo', 'MD07G1291900' => 'mdo', 'MD10G1138300' => 'mdo', 'MD11G1193400' => 'mdo', 'MD12G1179400' => 'mdo', 'MD16G1204000' => 'mdo', 'Medtr0179s0050' => 'mtr', 'Medtr2g097900' => 'mtr', 'Medtr3g029510' => 'mtr', 'Medtr5g099020' => 'mtr', 'Medtr7g070210' => 'mtr', 'Medtr8g036660' => 'mtr', 'Medtr8g037130' => 'mtr', 'Medtr8g037170' => 'mtr', 'Medtr8g037175' => 'mtr', 'MELO3C013263.2' => 'cme', 'MELO3C014595.2' => 'cme', 'MELO3C023550.2' => 'cme', 'MELO3C023976.2' => 'cme', 'MELO3C026023.2' => 'cme', 'Migut.B00018' => 'egut', 'Migut.B01295' => 'egut', 'Migut.D00600' => 'egut', 'Migut.J00100' => 'egut', 'Migut.J01775' => 'egut', 'Migut.N01597' => 'egut', 'MSTRG.18425' => 'ama', 'MSTRG.19949' => 'ama', 'MSTRG.20583' => 'ama', 'Nitab4.5_0000023g0320' => 'nta', 'Nitab4.5_0000634g0220' => 'nta', 'Nitab4.5_0000783g0280' => 'nta', 'Nitab4.5_0001186g0050' => 'nta', 'Nitab4.5_0001703g0030' => 'nta', 'Nitab4.5_0004057g0070' => 'nta', 'Nitab4.5_0004435g0020' => 'nta', 'Nitab4.5_0005600g0030' => 'nta', 'Nitab4.5_0005819g0050' => 'nta', 'Nitab4.5_0006559g0020' => 'nta', 'Nitab4.5_0006796g0060' => 'nta', 'Nitab4.5_0009371g0020' => 'nta', 'Nn2g15380' => 'nnu', 'Nn2g15382' => 'nnu', 'Nn6g31738' => 'nnu', 'Nn7g36198' => 'nnu', 'Nn7g36199' => 'nnu', 'Oeu004595.1' => 'oeu', 'Oeu006569.1' => 'oeu', 'Oeu014582.1' => 'oeu', 'Oeu021967.1' => 'oeu', 'Os01g0162101' => 'osa', 'Os01g0919100' => 'osa', 'Os02g0833100' => 'osa', 'Os03g0216700' => 'osa', 'Os09g0548300' => 'osa', 'Os10g0206800' => 'osa', 'Os12g0106600' => 'osa', 'Peaxi162Scf00004g02330' => 'pax', 'Peaxi162Scf00009g01232' => 'pax', 'Peaxi162Scf00362g00261' => 'pax', 'Peaxi162Scf00580g00420' => 'pax', 'Peaxi162Scf00953g00001' => 'pax', 'Peaxi162Scf01089g00028' => 'pax', 'PGR004G1364' => 'pgr', 'PGR031G2738' => 'pgr', 'PGR044G0310' => 'pgr', 'PGR119G2191' => 'pgr', 'PGR142G3699' => 'pgr', 'PGSC0003DMG400006865' => 'stu', 'PGSC0003DMG400006866' => 'stu', 'PGSC0003DMG400007358' => 'stu', 'PGSC0003DMG400008676' => 'stu', 'PGSC0003DMG400010706' => 'stu', 'PGSC0003DMG400011035' => 'stu', 'PGSC0003DMG400018638' => 'stu', 'Phvul.005G021900' => 'pvu', 'Phvul.007G254800' => 'pvu', 'Phvul.008G092900' => 'pvu', 'Phvul.008G291400' => 'pvu', 'Phvul.011G060000' => 'pvu', 'Phvul.011G211800' => 'pvu', 'Phvul.011G211900' => 'pvu', 'Phvul.L008943' => 'pvu', 'Potri.001G266900' => 'ptr', 'Potri.004G183600' => 'ptr', 'Potri.005G102800' => 'ptr', 'Potri.009G053700' => 'ptr', 'Potri.009G061100' => 'ptr', 'Potri.009G143400' => 'ptr', 'Potri.016G053600' => 'ptr', 'Potri.016G126000' => 'ptr', 'Pp3c23_9990' => 'ppa', 'Pp3c25_7510' => 'ppa', 'Pp3c6_16130' => 'ppa', 'PRCOL_00000550' => 'pco', 'PRCOL_00004073' => 'pco', 'Prupe.1G206700' => 'ppe', 'Prupe.2G013000' => 'ppe', 'Prupe.2G013100' => 'ppe', 'Prupe.3G126900' => 'ppe', 'Prupe.4G248800' => 'ppe', 'Prupe.4G250300' => 'ppe', 'Prupe.4G274900' => 'ppe', 'Prupe.6G284300' => 'ppe', 'Prupe.7G009500' => 'ppe', 'Prupe.7G013600' => 'ppe', 'Prupe.7G029900' => 'ppe', 'Prupe.7G066100' => 'ppe', 'Prupe.8G176900' => 'ppe', 'Psat2g001320' => 'psa', 'Psat3g124640' => 'psa', 'Psat4g191600' => 'psa', 'Psat5g207560' => 'psa', 'Psat5g285760' => 'psa', 'PSO339G0284' => 'pso', 'PSO339G5431' => 'pso', 'PSO384G2284' => 'pso', 'PSO541G1893' => 'pso', 'PSO675G3809' => 'pso', 'PSO782G2578' => 'pso', 'PSO801G0399' => 'pso', 'QL01p004738' => 'qlo', 'QL04p006546' => 'qlo', 'QL04p006577' => 'qlo', 'QL07p021263' => 'qlo', 'QL07p033976' => 'qlo', 'QL08p060183' => 'qlo', 'QL08p060543' => 'qlo', 'QL11p054234' => 'qlo', 'QL11p054527' => 'qlo', 'RcHm_v2.0_Chr1g0315981' => 'rch', 'RcHm_v2.0_Chr1g0316021' => 'rch', 'RcHm_v2.0_Chr2g0163361' => 'rch', 'RcHm_v2.0_Chr3g0461701' => 'rch', 'RcHm_v2.0_Chr3g0481351' => 'rch', 'RcHm_v2.0_Chr5g0052011' => 'rch', 'RcHm_v2.0_Chr6g0280181' => 'rch', 'Rhsim04G0100500' => 'rsi', 'Rhsim05G0048500' => 'rsi', 'Rhsim07G0055700' => 'rsi', 'Rhsim08G0028700' => 'rsi', 'Rhsim13G0221400' => 'rsi', 'RhsimUnG0142600' => 'rsi', 'Sabra04G0123500' => 'sbr', 'Sabra05G0085200' => 'sbr', 'Sabra09G0039000' => 'sbr', 'Sabra09G0045100' => 'sbr', 'Sabra09G0111200' => 'sbr', 'Sabra16G0056800' => 'sbr', 'Sabra16G0163700' => 'sbr', 'SalBow1G6485' => 'sbo', 'SalBow4G0021' => 'sbo', 'SalBow4G0067' => 'sbo', 'SalBow4G0252' => 'sbo', 'SalBow5G3840' => 'sbo', 'SalBow5G4008' => 'sbo', 'SalBow5G4323' => 'sbo', 'SalBow5G4687' => 'sbo', 'SalBow6G5987' => 'sbo', 'SalBow7G1248' => 'sbo', 'SalBow8G0115' => 'sbo', 'Sc09g0000700' => 'sci', 'Sc10g0000060' => 'sci', 'Sc14g0002400' => 'sci', 'Sc14g0005070' => 'sci', 'Sed0005513' => 'sed', 'Sed0010203' => 'sed', 'Sed0013071' => 'sed', 'Sed0014546' => 'sed', 'Sed0014991' => 'sed', 'Sed0019613' => 'sed', 'Sed0026176' => 'sed', 'Sed0027404' => 'sed', 'SEGI_10511' => 'sgi', 'SEGI_12605' => 'sgi', 'SEGI_14411' => 'sgi', 'SEGI_20886' => 'sgi', 'SEGI_39170' => 'sgi', 'SGA_v2.0_scaffold105G30439' => 'sas', 'SGA_v2.0_scaffold119G32733' => 'sas', 'SGA_v2.0_scaffold251G45066' => 'sas', 'SGA_v2.0_scaffold279G46812' => 'sas', 'SGA_v2.0_scaffold4254G54455' => 'sas', 'SGA_v2.0_scaffold4G02524' => 'sas', 'SGA_v2.0_scaffold58G20320' => 'sas', 'SGA_v2.0_scaffold81G26002' => 'sas', 'SGA_v2.0_scaffold85G26684' => 'sas', 'SGA_v2.0_scaffold8G04591' => 'sas', 'SGA_v2.0_scaffold8G04592' => 'sas', 'SHI29774' => 'shi', 'SMO134G0190' => 'smo', 'SMO340G0084' => 'smo', 'SMO347G0079' => 'smo', 'Solyc01g008420.3' => 'sly', 'Solyc01g087150.3' => 'sly', 'Solyc01g112090.3' => 'sly', 'Solyc02g061760.4' => 'sly', 'Solyc10g085330.2' => 'sly', 'Solyc10g085340.1' => 'sly', 'Solyc11g065820.3' => 'sly', 'Sopen01g003930' => 'spe', 'Sopen01g034210' => 'spe', 'Sopen01g054140' => 'spe', 'Sopen02g012800' => 'spe', 'Sopen10g034780' => 'spe', 'Sopen11g025570' => 'spe', 'Sp1g38000' => 'spa', 'Sp3g06950' => 'spa', 'Sp4g20660' => 'spa', 'Sp7g37390' => 'spa', 'TAR623G1389' => 'tar', 'TAR628G0575' => 'tar', 'TAR633G0164' => 'tar', 'TAR633G1823' => 'tar', 'THA.LOC104806045' => 'tha', 'THA.LOC104810248' => 'tha', 'THA.LOC104816898' => 'tha', 'THA.LOC104824738' => 'tha', 'THA.LOC104826676' => 'tha', 'THA.LOC109117134' => 'tha', 'Thecc.01G007900' => 'tca', 'Thecc.01G410900' => 'tca', 'Thecc.02G046700' => 'tca', 'Thecc.05G007300' => 'tca', 'Thecc.05G160500' => 'tca', 'Thecc.09G233100' => 'tca', 'Thhalv10011401m.g' => 'esa', 'Thhalv10016494m.g' => 'esa', 'Thhalv10020489m.g' => 'esa', 'Thhalv10024830m.g' => 'esa', 'TPR.G12151' => 'tpr', 'TPR.G1843' => 'tpr', 'TPR.G1850' => 'tpr', 'TPR.G18629' => 'tpr', 'TPR.G29929' => 'tpr', 'TPR.G31088' => 'tpr', 'TPR.G36474' => 'tpr', 'TPR.G6650' => 'tpr', 'TPR.G6831' => 'tpr', 'TWI09G1083' => 'twi', 'TWI32G0658' => 'twi', 'TWI38G2020' => 'twi', 'TWI73G0031' => 'twi', 'TWI77G0644' => 'twi', 'TWI79G0130' => 'twi', 'unitig_26.g9042' => 'ugi', 'unitig_26.g9043' => 'ugi', 'unitig_26.g9282' => 'ugi', 'unitig_27.g24872' => 'ugi', 'unitig_37.g12832' => 'ugi', 'vmacro04156' => 'vma', 'vmacro08905' => 'vma', 'vmacro08906' => 'vma', 'vmacro13666' => 'vma', 'vmacro17290' => 'vma', 'vmacro18448' => 'vma', 'VMungo0251G2879' => 'vmu', 'VMungo0647G1123' => 'vmu', 'VMungo0720G1415' => 'vmu', 'VMungo1080G0541' => 'vmu', 'VMungo1080G0866' => 'vmu', 'VMungo1127G0504' => 'vmu', 'VMungo1127G1247' => 'vmu', 'VMungo1127G1514' => 'vmu', 'VMungo1215G2323' => 'vmu', 'Zm00001eb008790' => 'zma', 'Zm00001eb094160' => 'zma', 'Zm00001eb100400' => 'zma', 'Zm00001eb130600' => 'zma', 'Zm00001eb143800' => 'zma', 'Zm00001eb261140' => 'zma', 'Zm00001eb262790' => 'zma', 'Zm00001eb262800' => 'zma', 'Zm00001eb320990' => 'zma', 'Zm00001eb424530' => 'zma' ) $gf_id = 'HOM05D000807' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000807' ) $data_identifier = 'HOM05D000807' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 31, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 9, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 14, 'gra' => (int) 8, 'vvi' => (int) 7, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 16, 'mes' => (int) 21, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 12, 'nnu' => (int) 5, 'oeu' => (int) 4, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 13, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 11, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 5, 'sas' => (int) 11, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 4, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424530' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1